Spring

Intro to Anaerobe Physiology

Semester: 

Winter

Offered: 

2024

Co-hosted by the Harvard Microbial Sciences Initiative, the Massachusetts Host-Microbiome Center, and the Harvard Graduate Program in Bacteriology.

Course Overview:
Life on planet earth has been dominated by anaerobes, from the earliest forms of life to the complex microbial communities that comprise your internal gut microbiota. This nanocourse will...

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Analyzing Genomic Data: Keeping the Patient in Mind

Semester: 

Spring

Offered: 

2024

Course description

Every day, patients are tested for disease-causing genetic variants or treated with anti-cancer medications based on the identification of actionable mutations. The foundation for much of this clinical genomic testing comes from the basic science laboratory. As researchers, it is important to keep in mind the clinical relevance of our work and how our findings may...
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Metabolomics for cancer research – Theory and practice

Semester: 

Spring

Offered: 

2024

Course Description
The field of cancer metabolism has grown tremendously in the past decade, contributing major advancements in our understanding of how to diagnose and treat tumors. Despite this, some of the tools required to study cancer metabolism remain out of reach for many labs. This is particularly true for metabolomics, as it...

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Computational Analysis of Heterogeneity of Cellular Images

Semester: 

Winter

Offered: 

2023

Cellular heterogeneity has become an increasingly important topic in many areas of cell biology on a wide range of spatiotemporal scales. This course will introduce important concepts of computational image analysis and machine learning that help us characterize cellular heterogeneity within cell images. After the formal lectures, we will utilize the standard software such as MATLAB, CellProfiler, ImageJ in hands-on experiences. The topics will include image processing, segmentation, tracking, feature extraction, and...

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Lab Trek: Navigating the Final Frontier of Safety and Regulations

Semester: 

Spring

Offered: 

2023
Exhaustive human, animal and environmental safety protocols are baked into our training as scientists, though safety culture remains tenuous in many academic spaces. Furthermore, with the rapid evolution and expansion of novel scientific techniques, entities and therapies, the frontiers of safety and regulation must evolve apace. This nanocourse aims to train and empower future scientists and leaders (in both academia and industry) to be critical about the...
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Tools & Strategies for Effective Science Writing

Semester: 

Spring

Offered: 

2023

Course Description
In order to go from a set of data to a published paper, it’s key to learn the framework of the manuscript building process, develop skills in writing, and find a community of peers who can help you articulate the importance of your research. In this Nanocourse, Dr. Marie Bao (BCMP, Harvard Medical School; former Editor-In-Chief of Developmental Cell), Dr. Milka Kostic (Chemical Biology, DFCI; former Senior Editor of Cell Chemical Biology & Structure), and Dr. Vivian Siegel (Scientific Communications, Biology, MIT; former Editor-In-...

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Electronics and Signal Processing for Experimental Rigs

Semester: 

Spring

Offered: 

2023

Instructors: Ofer Mazor, Pavel Gorelik

Course description:

Biomedical researchers often build and use experimental rigs consisting of several interconnected electronic instruments. These rigs are typically used to make high-quality recordings of weak biological signals. The goal of this course is to demystify the rig: What does each instrument do? How should they be connected? How does one troubleshoot noise, or adjust settings in a principled way?

The course will focus on fundamental concepts in electronics and signal processing,...

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Protein Structure Prediction: Harnessing AlphaFold/ColabFold

Semester: 

Spring

Offered: 

2023

Course Description

AlphaFold represents a dramatic increase in the power of AI systems to predict a protein’s 3D structure from its amino acid sequence. This nanocourse will introduce how predictive models like Alphafold/Collab work, their strengths and limitations, and how to interpret their predictive results.

This is a hands-on workshop; participants will use Alphafold and ColabFold, submit computing jobs to the O2 computing platform, and visualize 3D structures. No prior computational experience is required – the workshop will introduce...

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Metabolomics for cancer research – Theory and practice

Semester: 

Spring

Offered: 

2023

Course Description
The field of cancer metabolism has grown tremendously in the past decade, contributing major advancements in our understanding of how to diagnose and treat tumors. Despite this, some of the tools required to study cancer metabolism remain out of reach for many labs. This is particularly true for metabolomics, as it...

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Graduate TF Training in the Biomedical Sciences

Semester: 

Winter

Offered: 

2022

SESSIONS 1 and 2 HAVE BEEN MOVED ONLINE. ZOOM INFORMATION WILL BE PROVIDED TO REGISTERED STUDENTS.

This course is an introduction to the skills and frameworks necessary for success as a graduate student teaching fellow (TF) or teaching assistant (TA). After completing this 6 hour introduction, students will be able to:

- describe core pedagogy concepts including backwards design, formative assessment, active learning, alignment, and inclusive teaching
- identify ways these core concepts may influence their work as graduate student TFs/TAs...

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Arduino for Biologists: Building scientific instruments using Arduino

Semester: 

Spring

Offered: 

2022

Instructors: Ofer Mazor, Pavel Gorelik, Brett Graham

Course description:

The Arduino is a powerful and inexpensive digital microcontrollers that can be used to develop custom lab instruments. Many tasks that used to require a PC or expensive hardware can be put together with an Arduino and tens of dollars worth of parts. Developing microcontroller-based tools allows researchers to automate and scale up aspects of their research that were previously unfeasible.

This nanocourse will cover the basics of programming an Arduino microcontroller and...

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